STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0062Predicted coding region HP0062; Hypothetical protein; identified by GeneMark; putative. (86 aa)    
Predicted Functional Partners:
HP_0066
Conserved hypothetical ATP-binding protein; Similar to GP:1665846 percent identity: 34.66; identified by sequence similarity; putative.
   
 
 0.977
ftsK
Cell division protein (ftsK); Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the direction of DN [...]
   
 
 0.934
HP_0063
Predicted coding region HP0063; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.788
HP_0064
Predicted coding region HP0064; Hypothetical protein; identified by GeneMark; putative.
       0.771
HP_0065
Predicted coding region HP0065; Hypothetical protein; identified by GeneMark; putative.
  
    0.758
HP_0060
Predicted coding region HP0060; Hypothetical protein; identified by GeneMark; putative.
       0.732
HP_0061
Predicted coding region HP0061; Hypothetical protein; identified by GeneMark; putative.
       0.732
HP_0059
Predicted coding region HP0059; Hypothetical protein; identified by GeneMark; putative.
       0.689
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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