STRINGSTRING
rho protein (Helicobacter pylori 26695) - STRING interaction network
"rho" - Transcription termination factor Rho in Helicobacter pylori 26695
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (438 aa)    
Predicted Functional Partners:
nusG
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination (176 aa)
     
 
  0.941
polA
DNA polymerase I (polA); In addition to polymerase activity, this DNA polymerase exhibits 3’ to 5’ and 5’ to 3’ exonuclease activity (892 aa)
   
   
  0.912
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis (255 aa)
   
   
  0.852
ureA
Urease subunit alpha; Ammonia produced by ureolysis increases the gastric pH thereby providing an environment permissive for colonization of the stomach (238 aa)
           
  0.808
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (344 aa)
   
 
  0.797
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (559 aa)
   
 
  0.763
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (420 aa)
   
   
  0.756
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (347 aa)
           
  0.723
thrS
threonyl-tRNA synthetase (612 aa)
   
   
  0.720
rpoBC
DNA-directed RNA polymerase subunit beta/beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2890 aa)
   
 
  0.705
Your Current Organism:
Helicobacter pylori 26695
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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