STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0669Predicted coding region HP0669; Hypothetical protein; identified by GeneMark; putative. (933 aa)    
Predicted Functional Partners:
HP_0668
Predicted coding region HP0668; Hypothetical protein; identified by GeneMark; putative.
   
 0.997
HP_0667
Predicted coding region HP0667; Hypothetical protein; identified by GeneMark; putative.
     
 0.888
HP_0670
Predicted coding region HP0670; Hypothetical protein; identified by GeneMark; putative.
       0.773
HP_0664
Predicted coding region HP0664; Hypothetical protein; identified by GeneMark; putative; Belongs to the UPF0763 family.
       0.561
hemN
Oxygen-independent coproporphyrinogen III oxidase (hemN); Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.561
HP_0666
Anaerobic glycerol-3-phosphate dehydrogenase, subunit C (glpC); Similar to GB:M20938 SP:P13034 PID:146179 GB:U00096 PID:1788576 percent identity: 26.52; identified by sequence similarity; putative.
       0.561
HP_0671
Outer membrane protein (omp14); Similar to GB:AE000511 PID:2313793 percent identity: 100.00; identified by sequence similarity; putative.
       0.500
HP_1517
Type IIS restriction enzyme R and M protein (ECO57IR); Similar to GB:M74821 SP:P25239 GB:X61122 PID:145139 PID:41321 percent identity: 26.74; identified by sequence similarity; putative.
  
   
 0.494
HP_1472
Type IIS restriction enzyme M protein (mod); Similar to GB:L17341 SP:Q07605 PID:304140 percent identity: 32.45; identified by sequence similarity; putative.
  
   
 0.488
rnc
Ribonuclease III (rnc); Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.478
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.