STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoBPhosphopentomutase (deoB); Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (413 aa)    
Predicted Functional Partners:
deoD
Purine-nucleoside phosphorylase (deoD); Similar to GB:U14003 SP:P09743 GB:M60917 PID:147309 PID:537224 percent identity: 55.46; identified by sequence similarity; putative.
 
 
 0.993
prs
Phosphoribosylpyrophosphate synthetase (prsA); Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
     
 0.924
HP_1088
Transketolase A (tktA); Similar to GB:L42023 SP:P43757 PID:1006246 PID:1221138 PID:1205272 percent identity: 46.74; identified by sequence similarity; putative; Belongs to the transketolase family.
   
 
 0.922
HP_1275
Phosphomannomutase (algC){Pseudomonas aeruginosa}; Similar to GB:M60873 SP:P26276 GB:S43866 PID:150994 percent identity: 39.00; identified by sequence similarity; putative.
   
 
 0.921
HP_0574
Galactosidase acetyltransferase (lacA); Similar to GB:L43967 PID:1046109 SP:P47636 percent identity: 41.01; identified by sequence similarity; putative.
     
 0.920
nupC
Pyrimidine nucleoside transport protein (nupC); Involved in purine nucleosides uptake. Could also be involved in uptake of nucleobases.
  
  
 0.877
guaA
GMP synthase (guaA); Catalyzes the synthesis of GMP from XMP.
  
  
 0.533
HP_1530
Purine nucleoside phosphorylase (punB); Similar to GP:1638807 percent identity: 20.67; identified by sequence similarity; putative.
     
  0.499
polA
DNA polymerase I (polA); In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity.
     
 0.460
carB
Carbamoyl-phosphate synthase (glutamine-hydrolysing) (pyrAb); Similar to GB:X73308 SP:P46537 PID:312443 percent identity: 48.63; identified by sequence similarity; putative.
      
 0.443
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.