STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pfrBacterial non-heme ferritin; Iron-storage protein (167 aa)    
Predicted Functional Partners:
serB
PHOSPHOSERINE PHOSPHATASE; Similar to H. pylori 26695 gene HP0652
       0.827
fucT
Alpha-(1,3)-fucosyltransferase; Similar to H. pylori 26695 gene HP0651; Belongs to the glycosyltransferase 10 family
       0.703
msrAB
Peptide methionine sulfoxide reductase MsrA/MsrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity)
     
 0.567
frpB_1
Putative IRON-REGULATED OUTER MEMBRANE PROTEIN; Similar to H. pylori 26695 gene HP0876
      
 0.520
frpB_2
Putative IRON-REGULATED OUTER MEMBRANE PROTEIN; Similar to H. pylori 26695 gene HP0915 and HP0916
      
 0.520
amiE
Aliphatic amidase; Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia
  
  
 0.476
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
     
 0.433
rpoB
Bifunctional DNA-directed RNA polymerase subunit beta-beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
      
 0.402
Your Current Organism:
Helicobacter pylori J99
NCBI taxonomy Id: 85963
Other names: H. pylori J99, Helicobacter pylori J99, Helicobacter pylori str. J99, Helicobacter pylori strain J99
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