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scoB protein (Helicobacter pylori J99) - STRING interaction network
"scoB" - Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B in Helicobacter pylori J99
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scoBSuccinyl-CoA-3-ketoacid coenzyme A transferase subunit B; Similar to H. pylori 26695 gene HP0692; Belongs to the 3-oxoacid CoA-transferase subunit B family (207 aa)    
Predicted Functional Partners:
scoA
Succinyl-CoA-3-ketoacid coenzyme A transferase subunit A; Similar to H. pylori 26695 gene HP0691; Belongs to the 3-oxoacid CoA-transferase subunit A family (232 aa)
  0.999
thl
ACETYL-COA ACETYLTRANSFERASE; Similar to H. pylori 26695 gene HP0690; Belongs to the thiolase family (391 aa)
 
   
  0.943
atoE
Short-chain fatty acids transporter; Similar to H. pylori 26695 gene HP0693 (454 aa)
 
   
  0.875
jhp_0634
Putative Outer membrane protein; Similar to H. pylori 26695 gene HP0694 (336 aa)
              0.508
jhp_0633
Putative HYDANTOIN UTILIZATION; Similar to H. pylori 26695 gene HP0695 (712 aa)
         
  0.450
dgkA
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid (128 aa)
              0.444
jhp_0639
Putative; Similar to H. pylori 26695 gene HP0699 (342 aa)
              0.444
jhp_0643
Putative TRANSCRIPTIONAL REGULATOR; Similar to H. pylori 26695 gene HP0703 (381 aa)
              0.427
jhp_0642
Putative; Similar to H. pylori 26695 gene HP0702 (157 aa)
              0.427
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (828 aa)
              0.427
Your Current Organism:
Helicobacter pylori J99
NCBI taxonomy Id: 85963
Other names: H. pylori J99, Helicobacter pylori J99, Helicobacter pylori str. J99, Helicobacter pylori strain J99
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