CLCR_04048 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_04048

SHNi-TPR domain-containing protein. (525 aa)

Predicted Functional Partners:

hat1

0.981

asf1

0.978

hat2

0.970

HHT1

0.955

htb1

0.834

hta1

0.827

CLCR_02433

0.777

CLCR_07668

0.777

CLCR_10124

0.777

mcm6

0.644

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_02433	CLCR_04048	A0A1C1CES1	A0A1C1CIG1	GRF zinc finger domain-containing protein.	SHNi-TPR domain-containing protein.	0.777
CLCR_02433	asf1	A0A1C1CES1	A0A1C1D2A4	GRF zinc finger domain-containing protein.	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	0.834
CLCR_02433	hat1	A0A1C1CES1	A0A1C1CYK0	GRF zinc finger domain-containing protein.	Histone acetyltransferase type B catalytic subunit; Catalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair; Belongs to the HAT1 family.	0.899
CLCR_02433	hat2	A0A1C1CES1	A0A1C1CVY3	GRF zinc finger domain-containing protein.	Histone acetyltransferase type B subunit 2.	0.925
CLCR_02433	hta1	A0A1C1CES1	A0A1C1CGL5	GRF zinc finger domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.856
CLCR_02433	htb1	A0A1C1CES1	A0A1C1CGL4	GRF zinc finger domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.960
CLCR_02433	mcm6	A0A1C1CES1	A0A1C1D2E4	GRF zinc finger domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.414
CLCR_04048	CLCR_02433	A0A1C1CIG1	A0A1C1CES1	SHNi-TPR domain-containing protein.	GRF zinc finger domain-containing protein.	0.777
CLCR_04048	CLCR_07668	A0A1C1CIG1	A0A1C1CPV7	SHNi-TPR domain-containing protein.	Uncharacterized protein.	0.777
CLCR_04048	CLCR_10124	A0A1C1CIG1	A0A1C1CY05	SHNi-TPR domain-containing protein.	Tat pathway signal sequence.	0.777
CLCR_04048	HHT1	A0A1C1CIG1	A0A1C1CEI2	SHNi-TPR domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.955
CLCR_04048	asf1	A0A1C1CIG1	A0A1C1D2A4	SHNi-TPR domain-containing protein.	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	0.978
CLCR_04048	hat1	A0A1C1CIG1	A0A1C1CYK0	SHNi-TPR domain-containing protein.	Histone acetyltransferase type B catalytic subunit; Catalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair; Belongs to the HAT1 family.	0.981
CLCR_04048	hat2	A0A1C1CIG1	A0A1C1CVY3	SHNi-TPR domain-containing protein.	Histone acetyltransferase type B subunit 2.	0.970
CLCR_04048	hta1	A0A1C1CIG1	A0A1C1CGL5	SHNi-TPR domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.827
CLCR_04048	htb1	A0A1C1CIG1	A0A1C1CGL4	SHNi-TPR domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.834
CLCR_04048	mcm6	A0A1C1CIG1	A0A1C1D2E4	SHNi-TPR domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.644
CLCR_07668	CLCR_04048	A0A1C1CPV7	A0A1C1CIG1	Uncharacterized protein.	SHNi-TPR domain-containing protein.	0.777
CLCR_07668	asf1	A0A1C1CPV7	A0A1C1D2A4	Uncharacterized protein.	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	0.834
CLCR_07668	hat1	A0A1C1CPV7	A0A1C1CYK0	Uncharacterized protein.	Histone acetyltransferase type B catalytic subunit; Catalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair; Belongs to the HAT1 family.	0.899