STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_04960Ribosome recycling factor domain-containing protein. (334 aa)    
Predicted Functional Partners:
rps23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.997
mrpl8
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.997
CLCR_03031
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.996
MRPS16
37S ribosomal protein S16, mitochondrial.
  
 
 0.995
CLCR_09280
Uncharacterized protein.
  
 
 0.995
CLCR_01698
Mitochondrial 54S ribosomal protein IMG1.
  
 
 0.994
CLCR_03542
Mitochondrial 37S ribosomal protein MRP4.
  
 
 0.992
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 
 0.990
RPL26A
60S ribosomal protein L26-1.
   
 
 0.989
rpl25b
60S ribosomal protein L25-B.
   
 
 0.988
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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