STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2207Hypothetical protein. (593 aa)    
Predicted Functional Partners:
J421_2208
Protein of unknown function DUF305.
     0.993
J421_4120
Protein of unknown function DUF305.
     0.975
J421_0667
Protein of unknown function DUF305.
     0.963
J421_2206
Protein of unknown function DUF3592.
       0.723
J421_2210
Dicarboxylate carrier MatC domain protein.
 
     0.640
J421_4344
Regulatory protein TetR.
  
     0.625
J421_2328
Hypothetical protein.
  
     0.579
J421_2209
AMP-dependent synthetase and ligase.
       0.526
J421_1943
Hypothetical protein.
 
     0.479
J421_1767
Peptidase S1 and S6 chymotrypsin/Hap.
  
     0.464
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.