STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_3638ABC-type transporter, integral membrane subunit. (327 aa)    
Predicted Functional Partners:
J421_2680
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 0.997
J421_3639
ABC-type transporter, integral membrane subunit.
 
0.996
J421_2681
ABC-type transporter, integral membrane subunit.
 
 0.995
J421_3637
ABC-type transporter, periplasmic subunit.
 0.995
J421_2683
ABC-type transporter, periplasmic subunit.
 0.987
J421_3721
ABC-type transporter, periplasmic subunit.
 0.987
J421_2587
ABC-type transporter, integral membrane subunit.
 
0.983
J421_2541
ABC-type transporter, periplasmic subunit.
 
 0.946
J421_2679
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
 0.931
J421_2682
ABC-type transporter, integral membrane subunit.
  
  
 
0.911
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.