STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4210Hypothetical protein. (376 aa)    
Predicted Functional Partners:
J421_4211
Tetratricopeptide TPR_1 repeat-containing protein.
 
     0.824
J421_3636
Heparinase II/III family protein.
  
     0.763
J421_2698
GCN5-related N-acetyltransferase.
 
     0.760
J421_0060
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.757
J421_3932
RagB/SusD domain-containing protein.
  
     0.748
J421_3067
Hypothetical protein.
 
     0.732
J421_2545
Protein of unknown function DUF490.
  
     0.724
J421_3690
Ig domain protein group 2 domain protein.
  
     0.703
J421_0564
Hypothetical protein.
  
     0.701
J421_2924
Ig domain protein group 1 domain protein.
  
     0.701
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.