STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4403Type II secretion system protein E. (543 aa)    
Predicted Functional Partners:
J421_4402
Type II secretion system F domain-containing protein.
 
 0.986
J421_4156
Type II secretion system F domain-containing protein.
 
 0.944
J421_4404
Type II and III secretion system protein.
 
  
 0.921
J421_3864
Type II secretion system protein E.
  
  
 
0.911
J421_3832
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.853
J421_4409
Hypothetical protein.
     
 0.737
J421_1152
Putative pilin.
 
 
 0.732
J421_4406
General secretion pathway M protein.
     
 0.707
J421_4405
Hypothetical protein.
       0.693
J421_4407
Hypothetical protein.
       0.693
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.