STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4520Glycoside hydrolase family 2 sugar binding protein; Belongs to the glycosyl hydrolase 2 family. (901 aa)    
Predicted Functional Partners:
J421_4530
Glycosyl hydrolase family 98 putative carbohydrate binding module.
 
  
  0.957
J421_4507
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.927
J421_0655
Glycoside hydrolase clan GH-D.
  
 
 0.914
J421_3753
ROK family protein.
     
 0.904
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.819
J421_4516
Protein of unknown function DUF1680.
 
     0.755
J421_4514
Protein of unknown function DUF303 acetylesterase; Belongs to the glycosyl hydrolase 2 family.
 
     0.741
J421_4521
Hypothetical protein.
       0.732
J421_4517
Glycoside hydrolase family 43.
 
     0.725
J421_4508
Glycoside hydrolase family 9.
 
  
 0.652
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.