Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_339CRISPR-associated protein Csm2. (149 aa)    
Predicted Functional Partners:
TAGGR_336
CRISPR-associated protein Csm5.
 
 
 0.998
TAGGR_337
CRISPR-associated protein Csm4.
 
 
 0.998
TAGGR_338
CRISPR-associated protein Csm3.
 
 
 0.998
TAGGR_340
CRISPR-associated protein Csm1.
 
 
 0.995
TAGGR_335
CRISPR-associated endoribonuclease Cas6.
 
   
 0.935
GAQ95519.1
Hypothetical protein.
  
 
 0.915
TAGGR_341
CRISPR-associated protein Csx14.
 
     0.794
GAQ94181.1
Hypothetical protein.
  
     0.620
GAQ94278.1
Hypothetical protein.
  
     0.583
GAQ95654.1
Hypothetical protein.
  
     0.579
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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