STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0084Putative metallophosphoesterase. (254 aa)    
Predicted Functional Partners:
BMS_0583
Putative lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
    
 0.939
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
     
 0.927
BMS_0083
Hypothetical protein.
       0.773
BMS_0132
Putative TPR repeat protein.
  
     0.572
fliC2
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.503
BMS_0021
Putative chaperone SurA precursor (peptidyl-prolyl cis-trans isomerase).
  
     0.447
BMS_3431
Conserved hypothetical protein.
 
     0.444
cpaC
Putative pilus assembly-related protein; Belongs to the bacterial secretin family.
  
     0.431
BMS_3144
Hypothetical protein.
  
     0.420
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.