STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0103Putative penicillin-binding protein. (430 aa)    
Predicted Functional Partners:
ftsI
Putative penicillin-binding protein.
  
  
 0.948
BMS_2914
Penicillin-binding protein.
  
  
  0.918
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 
 0.806
sipS
Putative signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.801
ftsW
Cell division protein; Belongs to the SEDS family.
 
 
 0.794
BMS_2874
Putative heat shock-like protein.
  
 
 0.779
rrmJ
23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
       0.773
BMS_0101
Putative sigma-54 interacting protein.
       0.701
murE
Probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase.
  
  
 0.650
BMS_3240
Putative membrane protein.
  
     0.642
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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