STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0111Putative ATPase. (315 aa)    
Predicted Functional Partners:
BMS_0112
Conserved hypothetical protein.
 
  
 0.966
BMS_0114
Includes von Willebrand factor, type A domain and similarity to a Bacteroides protein associated with aerotolerance UniProt:Q9X4N3.
 
  
 0.936
BMS_0115
Includes von Willebrand factor, type A domain and similarity to a Bacteroides protein associated with aerotolerance UniProt:Q9X4N3.
 
   
 0.880
BMS_0116
Putative membrane protein.
  
  
 0.824
BMS_0118
Putative shikimate dehydrogenase.
  
  
 0.789
ribC
Riboflavin biosynthesis protein RibC; Belongs to the ribF family.
       0.785
BMS_0113
Putative membrane protein.
       0.773
BMS_0110
Conserved hypothetical protein; Belongs to the methyltransferase superfamily.
       0.768
BMS_0108
Putative secreted protein.
       0.767
BMS_0109
Putative large secreted protein.
       0.767
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.