STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilEPilin. (192 aa)    
Predicted Functional Partners:
pilG
Pilus-assembly protein.
 
  
 0.897
pilF
Type IV pilus assembly protein.
 
 
 0.884
pilD
Putative type IV prepilin signal peptidase.
 
  
 0.803
gspF
General secretion pathway protein F.
 
  
 0.797
pilT
Putative twitching mobility protein.
 
   
 0.792
BMS_1269
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.773
BMS_0127
Putative pilus assembly protein.
 
  
 0.765
BMS_0131
Putative pilus assembly protein.
 
   
 0.763
BMS_1265
Putative exported protein.
  
 
 0.728
BMS_1263
Putative exported protein.
  
 
 0.699
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.