STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0125Putative pilus transport protein. (254 aa)    
Predicted Functional Partners:
BMS_0124
Putative pilus-related ABC transporter ATP-binding subunit.
 
 
 0.972
pilD
Putative type IV prepilin signal peptidase.
 
     0.821
BMS_1357
Putative ABC transporter, ATP-binding protein.
 
 
 0.795
BMS_0127
Putative pilus assembly protein.
 
     0.750
BMS_0708
Putative ABC transporter ATP-binding protein.
 
 
 0.726
BMS_2727
Putative putrescine transport ATP-binding protein.
  
 
 0.669
BMS_3069
ABC transport system, ATP-binding protein.
  
 
 0.669
BMS_0123
Putative secreted protein.
       0.634
mglA
Putative mutual gliding-motility protein MglA.
  
     0.610
BMS_0132
Putative TPR repeat protein.
 
   
 0.566
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.