STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbiGPutative epimerase/dehydratase. (332 aa)    
Predicted Functional Partners:
udg
Putative UDP-glucose dehydrogenase (CPS biosynthesis).
  
 0.934
yghO
Conserved hypothetical protein.
 
     0.925
BMS_3136
Putative UDP-glucose-4-epimerase.
  
  
  0.924
BMS_0372
Putative epimerase/dehydratase.
  
  
  0.916
exoB
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
0.914
BMS_0481
Putative UDP-glucose 4-epimerase.
  
  
  0.913
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.908
BMS_0369
Putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase.
     
  0.900
galE
UDP-glucose 4-epimerase.
     
  0.900
BMS_1209
Putative 8-amino-7-oxononanoate synthase.
 
  
 0.862
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.