STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_1563Putative membrane protein. (348 aa)    
Predicted Functional Partners:
BMS_0523
Putative TonB-dependent outer membrane receptor.
    
 
 0.777
BMS_1562
Hypothetical protein.
       0.773
BMS_1565
Putative bi-functional transferase/deacetylase.
  
  
 0.645
csuD
Putative pilus assembly protein; Central part of protein is similar to Acinetobacter baumannii CsuD. UniProt:Q6XBY3 (EMBL:AY241696) (832 aa) fasta scores: E()=7.2e-15, 22.384% id in 688 aa, and to Vibrio vulnificus (strain YJ016) p pilus assembly protein, porin papc. UniProt:Q7MLA7 (EMBL:BA000037) (800 aa) fasta scores: E()=9.8e-27, 21.026% id in 799 aa.
   
  
 0.609
BMS_1598
Putative pilus assembly protein.
   
    0.604
BMS_1566
Putative membrane protein.
     
 0.588
BMS_1564
Putative reponse regulator.
       0.562
BMS_0452
Putative oter membrane protein.
  
  
 0.549
BMS_2753
Putative two-component response regulator with GGDEF sensory box protein.
  
  
 0.502
BMS_1391
Putative membrane protein.
  
     0.489
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.