STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_3053Hypothetical protein. (358 aa)    
Predicted Functional Partners:
nifS
Cysteine desulfurase.
       0.773
BMS_3050
Putative rhodanese domain protein.
     
 0.707
nadA
Quinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.668
BMS_0500
Putative lipoprotein; Belongs to the peptidase S1B family.
  
     0.613
BMS_0409
Putative exported protein.
  
     0.572
BMS_0267
Putative membrane protein.
  
     0.526
BMS_2226
Conserved hypothetical protein.
  
     0.455
BMS_3048
Putative chromosome partitioning protein.
       0.431
btuF
Putative vitamin B12-binding protein precursor.
  
     0.430
BMS_0416
Putative NUDIX hydrolase.
  
   
 0.418
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.