STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C0Z20_16240PAS domain S-box protein. (694 aa)    
Predicted Functional Partners:
C0Z20_00465
PAS domain S-box protein.
  
 0.994
C0Z20_17795
Histidine kinase.
 
 0.994
C0Z20_16390
Hybrid sensor histidine kinase/response regulator.
  
 0.989
C0Z20_16245
DNA-binding response regulator.
 
 0.982
C0Z20_26935
Response regulator.
 
 0.981
C0Z20_02245
Hybrid sensor histidine kinase/response regulator.
 
 0.978
C0Z20_26975
Sensor histidine kinase.
 
0.975
C0Z20_03370
Uncharacterized protein.
 
 0.970
C0Z20_03265
Uncharacterized protein.
 
 0.970
C0Z20_04045
Uncharacterized protein.
 
0.968
Your Current Organism:
Trinickia symbiotica
NCBI taxonomy Id: 863227
Other names: BCRC 80258, Burkholderia sp. JPY347, Burkholderia sp. NKMU-JPY345, Burkholderia sp. NKMU-JPY347, Burkholderia sp. NKMU-JPY366, Burkholderia sp. NKMU-JPY581, Burkholderia symbiotica, Burkholderia symbiotica Sheu et al. 2012, KCTC 23309, LMG 26032, LMG:26032, Paraburkholderia symbiotica, Paraburkholderia symbiotica (Sheu et al. 2012) Sawana et al. 2015, T. symbiotica, Trinickia symbiotica (Sheu et al. 2012) Estrada-de Los Santos et al. 2018, strain JPY-345
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.