STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01502.1KEGG: fbc:FB2170_16981 hypothetical protein; SPTR: Putative uncharacterized protein. (123 aa)    
Predicted Functional Partners:
EHQ01501.1
PFAM: DSBA-like thioredoxin domain; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: zpr:ZPR_1443 dithiol-disulfide isomerase; PFAM: DSBA oxidoreductase; SPTR: Predicted dithiol-disulfide isomerase.
       0.773
EHQ01921.1
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; Peptidase S24-like; InterPro IPR001387:IPR019759; KEGG: gfo:GFO_0270 HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix type 3; Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3; SPTR: HTH_3 family transcriptional regulator protein.
  
     0.581
EHQ01293.1
PFAM: Phospholipase/Carboxylesterase; InterPro IPR003140; KEGG: gfo:GFO_2078 hypothetical protein; PFAM: Phospholipase/carboxylesterase; SPTR: Putative uncharacterized protein.
  
     0.577
EHQ03004.1
KEGG: gfo:GFO_3522 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.555
EHQ01193.1
PFAM: Protein of unknown function (DUF2807); KEGG: gfo:GFO_2656 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.526
EHQ03400.1
KEGG: zpr:ZPR_3765 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.432
EHQ01503.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: fbc:FB2170_11446 putative RNA polymerase sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Putative RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
       0.408
EHQ01504.1
KEGG: fbc:FB2170_11451 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.408
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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