STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP50854.1Glycosidase. (583 aa)    
Predicted Functional Partners:
SFP79622.1
Pullulanase/glycogen debranching enzyme.
 
  0.958
SFP81942.1
Alpha amylase, catalytic domain.
 
  
 
0.923
SFP00892.1
Maltose/maltodextrin transport system permease protein.
  
 0.720
SFP35981.1
Starch synthase.
 
 
 0.657
SFP12062.1
Glycosidase.
  
     0.635
SFP00866.1
Maltose/maltodextrin transport system permease protein.
 
  
 0.592
SFP12125.1
Pullulanase, type I.
 
  
  0.584
SFO97148.1
1,4-alpha-glucan branching enzyme.
 
 0.575
SFP66370.1
Maltooligosyltrehalose trehalohydrolase.
 
 
0.536
SFP50876.1
AraC-type DNA-binding protein.
     
 0.532
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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