STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG19138.1Y414 protein; KEGG: mth:MTH1221 hypothetical protein; TIGRFAM: Y414; PFAM: ATP dependent DNA ligase, central. (404 aa)    
Predicted Functional Partners:
AEG18749.1
UPF0278 protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.785
AEG19139.1
KEGG: mmg:MTBMA_c16070 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.
       0.780
AEG19137.1
Prephenate dehydratase; Manually curated; KEGG: mmg:MTBMA_c16050 prephenate dehydratase; PFAM: Prephenate dehydratase; Amino acid-binding ACT.
       0.744
AEG18987.1
UPF0216 protein; KEGG: mth:MTH949 hypothetical protein; HAMAP: UPF0216 protein; PFAM: Protein of unknown function DUF61; Belongs to the UPF0216 family.
  
     0.636
AEG18734.1
PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: mfv:Mfer_0106 glutamate synthase alpha subunit domain protein.
  
     0.610
AEG19349.1
PFAM: Protein of unknown function DUF166; KEGG: mmg:MTBMA_c17460 hypothetical protein.
 
     0.588
AEG19140.1
CBS domain containing membrane protein; KEGG: mth:MTH1223 inosine-5'-monophosphate dehydrogenase related protein II; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.
 
     0.518
AEG19244.1
KEGG: mmg:MTBMA_c15860 DNA polymerase; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain; SMART: DNA-directed DNA polymerase, family B.
 
    0.508
AEG17245.1
AAA ATPase central domain protein; KEGG: mth:MTH1011 ATP-dependent 26S protease regulatory subunit 8; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
  
     0.506
AEG17505.1
Brix domain protein; Probably involved in the biogenesis of the ribosome.
 
     0.493
Your Current Organism:
Methanobacterium paludis
NCBI taxonomy Id: 868131
Other names: DSM 25820, JCM 18151, M. paludis, Methanobacterium paludis Cadillo-Quiroz et al. 2014, Methanobacterium sp. SWAN1, strain SWAN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.