STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93667.1PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: drm:Dred_1278 2-hydroxyglutaryl-CoA dehydratase, D-component. (384 aa)    
Predicted Functional Partners:
AEF93668.1
TIGRFAM: CoA enzyme activase; KEGG: drm:Dred_1279 putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type.
 
 0.996
AEF93496.1
KEGG: drm:Dred_2687 putative CoA-substrate-specific enzyme activase; TIGRFAM: CoA enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type.
 
 0.967
AEF94808.1
Selenium metabolism protein YedF; KEGG: drm:Dred_1242 SirA family protein; TIGRFAM: SirA-related, selenium metabolism; PFAM: SirA-like; Belongs to the sulfur carrier protein TusA family.
 
    0.818
AEF94430.1
KEGG: drm:Dred_2185 selenocysteine-specific translation elongation factor; TIGRFAM: Translation elongation factor, selenocysteine-specific; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor SelB, winged helix, type 3.
  
     0.559
AEF93666.1
Hypothetical protein.
       0.490
AEF93153.1
TIGRFAM: Cysteine desulfurase-related, unknown function; KEGG: drm:Dred_0266 cysteine desulfurase family protein; PFAM: Aminotransferase, class V/Cysteine desulfurase.
 
     0.472
asnS
PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; HAMAP: Asparaginyl-tRNA synthetase, class IIb; KEGG: drm:Dred_1281 asparaginyl-tRNA synthetase.
       0.445
AEF94887.1
KEGG: drm:Dred_1123 putative CoA-substrate-specific enzyme activase; TIGRFAM: CoA enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type.
 
 0.432
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
  
     0.425
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
     0.425
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.