STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93808.1HI0933 family protein; KEGG: drm:Dred_1437 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like. (419 aa)    
Predicted Functional Partners:
AEF93807.1
PFAM: FAD dependent oxidoreductase; KEGG: drm:Dred_1436 FAD dependent oxidoreductase.
     
 0.813
AEF93809.1
PFAM: Protein of unknown function DUF939; KEGG: drm:Dred_1438 membrane protein-like protein.
 
     0.811
AEF93810.1
KEGG: drm:Dred_1439 hypothetical protein.
       0.574
AEF93806.1
Hypothetical protein.
       0.466
AEF93811.1
KEGG: drm:Dred_1440 hydrogenase large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S binding domain.
       0.416
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.402
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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