STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylACOGs: COG2115 Xylose isomerase; HAMAP: Xylose isomerase; InterPro IPR012307:IPR001998:IPR013452; KEGG: bvu:BVU_3953 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Xylose isomerase; SPTR: Putative uncharacterized protein; TIGRFAM: Xylose isomerase, bacterial type; IMG reference gene:2504608216; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Belongs to the xylose isomerase family. (437 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485:IPR006000; KEGG: plu:plu1959 xylulose kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; SPTR: D-xylulokinase; TIGRFAM: Xylulokinase; IMG reference gene:2504608217; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase.
 
 
 0.982
AEB15024.1
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: tde:TDE2722 carbhohydrate kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; SPTR: Carhohydrate kinase, FGGY family; IMG reference gene:2504609104; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
 
 
 0.936
AEB13856.1
Fructokinase; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: ere:EUBREC_0258 PfkB-type carbohydrate kinase family protein; PFAM: Carbohydrate/purine kinase; PRIAM: Fructokinase; SPTR: Sugar kinases, ribokinase family; IMG reference gene:2504607851; PFAM: pfkB family carbohydrate kinase.
    
 0.911
AEB13357.1
Putative PTS IIA-like nitrogen-regulatory protein PtsN; COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: tpp:TPASS_0085 PTS system, nitrogen regulatory IIA component; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: PTS system, IIA component; IMG reference gene:2504607310; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
     
 0.903
AEB14457.1
Hexokinase; COGs: COG5026 Hexokinase; InterPro IPR022672:IPR022673; KEGG: tpp:TPASS_0505 hexokinase; PFAM: Hexokinase, C-terminal; Hexokinase, N-terminal; PRIAM: Hexokinase; SPTR: Hexokinase; IMG reference gene:2504608503; PFAM: Hexokinase.
     
 0.901
AEB14683.1
COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103; KEGG: cpf:CPF_0826 glycosy hydrolase family protein; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; PRIAM: Beta-galactosidase; SPTR: Beta-galactosidase/beta-glucuronidase; IMG reference gene:2504608738; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.
    
 0.810
AEB14883.1
Glycoside hydrolase family 2 TIM barrel; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103:IPR004199; KEGG: rca:Rcas_2493 beta-galactosidase; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 42, domain 5; SPTR: Glycoside hydrolase family 2 TIM barrel; IMG reference gene:2504608958; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Beta galactosidase small chain; Glycosyl hydrolases family 2, sugar binding domain.
    
 0.810
AEB13023.1
Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sta:STHERM_c18500 beta-xylosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Beta-xylosidase; IMG reference gene:2504606955; PFAM: Glycosyl hydrolases family 43.
 
  
 0.599
AEB14193.1
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: ssm:Spirs_3785 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family; IMG reference gene:2504608218; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.
       0.491
cmk
COGs: COG1102 Cytidylate kinase; InterPro IPR011994:IPR011892; KEGG: tde:TDE1087 cytidylate kinase; PFAM: Cytidylate kinase domain; SPTR: Putative cytidylate kinase; TIGRFAM: Cytidylate kinase, putative; IMG reference gene:2504608213; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase, putative.
       0.443
Your Current Organism:
Treponema succinifaciens
NCBI taxonomy Id: 869209
Other names: T. succinifaciens DSM 2489, Treponema succinifaciens 6091, Treponema succinifaciens DSM 2489, Treponema succinifaciens str. DSM 2489, Treponema succinifaciens strain DSM 2489
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