STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM10999.1Hypothetical protein. (381 aa)    
Predicted Functional Partners:
AFM11000.1
Hypothetical protein.
       0.773
AFM11001.1
Hypothetical protein.
       0.757
AFM11002.1
KEGG: pfl:PFL_6190 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.559
AFM11003.1
PFAM: Protein of unknown function (DUF692); Uncharacterized protein conserved in bacteria (DUF2063); COGs: COG3220 conserved hypothetical protein; InterPro IPR007801; KEGG: pfs:PFLU6099 hypothetical protein; PFAM: Protein of unknown function DUF692; SPTR: UPF0276 protein PFLU_6099; manually curated.
       0.548
AFM11004.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, TIGR02943 family; RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: mep:MPQ_1797 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70.
       0.548
AFM11005.1
Hypothetical protein.
       0.548
AFM11006.1
Hypothetical protein.
       0.548
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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