STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13616.1PFAM: Outer membrane lipoprotein carrier protein LolA; COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: lic:LIC12545 outer membrane lipoprotein carrier protein; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein-sorting protein. (229 aa)    
Predicted Functional Partners:
AFM13615.1
COGs: COG1426 conserved hypothetical protein; KEGG: lbl:LBL_2154 transcriptional regulator; SPTR: Transcriptional regulator.
 
     0.869
AFM13563.1
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: lbl:LBL_1882 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.744
AFM12191.1
Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; Flagellin hook IN motif; TIGRFAM: flagellar hook-associated protein 3; COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492:IPR010810:IPR013384; KEGG: lbf:LBF_3100 flagellar hook-associated protein FlgL; PFAM: Flagellin hook, IN motif; Flagellin, N-terminal; SPTR: Flagellar hook-associated protein 3 (HAP3); TIGRFAM: Flagellar hook-associated protein 3.
  
     0.698
AFM13720.1
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: lbf:LBF_1583 Oma87-like outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative outer membrane protein; putative signal peptide; TIGRFAM: Outer membrane assembly protein, YaeT.
  
   
 0.691
AFM13614.1
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.688
AFM11167.1
Diguanylate phosphodiesterase; PFAM: EAL domain; COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: lic:LIC20198 hypothetical protein; PFAM: Diguanylate phosphodiesterase, predicted; SPTR: Putative uncharacterized protein.
  
     0.672
AFM14467.1
PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; COGs: COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA; InterPro IPR001437:IPR019734; KEGG: lic:LIC10789 transcript cleavage factor/unknown domain fusion protein; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Transcription elongation factor.
  
     0.651
AFM13913.1
P83100 family protein; PFAM: Borrelia P83/100 protein; InterPro IPR007926; KEGG: lil:LA_0365 hypothetical protein; PFAM: Borrelia P83100; SPTR: Putative uncharacterized protein.
  
  
 0.649
AFM12277.1
PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; InterPro IPR007627:IPR014284; KEGG: lbl:LBL_0290 RNA polymerase sigma subunit; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma subunit; TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.648
AFM12522.1
TolC-like protein; PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; KEGG: lbf:LBF_2005 TolC-like protein; SPTR: Putative outer membrane efflux protein; putative signal peptide.
  
     0.641
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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