STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM14655.1Oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR004558:IPR006638:IPR007197:IPR010723; KEGG: pmx:PERMA_1329 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; Belongs to the anaerobic copr [...] (471 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.956
AFM14690.1
PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR004677:IPR003468:IPR000883; KEGG: phe:Phep_2484 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: Cytochrome C oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; SPTR: Cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome C oxidase, monoha [...]
 
  
 0.946
AFM10903.1
PFAM: Radical SAM superfamily; HemN C-terminal region; COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: adg:Adeg_0603 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative oxygen-independent coproporphyrinogen III oxidase.
  
  
 
0.928
AFM12031.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
    
 0.924
AFM14687.1
PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG; COGs: COG0348 Polyferredoxin; InterPro IPR014116; KEGG: cytochrome c oxidase accessory protein CcoG; SPTR: Probable iron-sulfur protein; TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG.
 
  
 0.724
AFM14656.1
Transcriptional regulator, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; COGs: COG1734 DnaK suppressor protein; KEGG: tgr:Tgr7_3066 transcriptional regulator, TraR/DksA family; SPTR: Transcriptional regulator, TraR/DksA family.
 
  
 0.676
AFM14688.1
PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; InterPro IPR003088; KEGG: cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I.
 
  
 0.651
AFM14685.1
Integral membrane protein; PFAM: Cytochrome C biogenesis protein transmembrane region; COGs: COG2836 conserved hypothetical protein; KEGG: psn:Pedsa_0373 integral membrane protein; SPTR: Integral membrane protein.
 
   
 0.598
AFM13381.1
PFAM: Delta-aminolevulinic acid dehydratase; COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; SPTR: Porphobilinogen synthase; Belongs to the ALAD family.
 
  
 0.553
AFM14692.1
PFAM: E1-E2 ATPase; Putative metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG2217 Cation transport ATPase; InterPro IPR008250:IPR005834; KEGG: P-type HAD superfamily ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; SPTR: E1-E2 ATPase subfamily, putative.
 
  
 0.549
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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