STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34696.1KEGG: noc:Noc_0283 XRE family transcriptional regulator; SPTR: Transcriptional regulator, XRE family. (59 aa)    
Predicted Functional Partners:
EIJ34694.1
PFAM: Protein of unknown function (DUF497); COGs: COG2929 conserved hypothetical protein; InterPro IPR007460; KEGG: npu:Npun_F0976 hypothetical protein; PFAM: Protein of unknown function DUF497; SPTR: Putative uncharacterized protein.
       0.778
EIJ34695.1
KEGG: nhl:Nhal_2998 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
EIJ34693.1
PFAM: Phage integrase family; InterPro IPR002104; KEGG: tau:Tola_2682 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase.
       0.658
EIJ35104.1
Adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: Adenosylhomocysteinase; InterPro IPR000043:IPR015878; KEGG: tbd:Tbd_2519 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; SPTR: Adenosylhomocysteinase; TIGRFAM: S-adenosyl-L-homocysteine hydrolase.
     
 0.498
EIJ36533.1
Peptidoglycan-binding lysin domain-containing protein; PFAM: Putative phospholipid-binding domain; LysM domain; InterPro IPR002482:IPR007055:IPR018392; KEGG: apa:APP7_1566 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; Transport-associated; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: XkdP protein.
   
    0.478
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.