STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ35610.1PFAM: Beta propeller domain; COGs: COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats; InterPro IPR019198; KEGG: sde:Sde_2939 ATPase; PFAM: Beta propeller domain; SPTR: Putative polysaccharide-binding protein. (671 aa)    
Predicted Functional Partners:
EIJ35609.1
SMC domain-containing protein; COGs: COG4637 ATPase; KEGG: pmy:Pmen_1016 SMC domain-containing protein; SPTR: SMC domain protein.
       0.678
EIJ33681.1
PDZ/DHR/GLGF domain protein; TIGRFAM: general secretion pathway protein C; COGs: COG3031 Type II secretory pathway component PulC; InterPro IPR001478; KEGG: hth:HTH_1757 hypothetical protein; PFAM: PDZ/DHR/GLGF; SPTR: Putative uncharacterized protein.
  
     0.627
EIJ33186.1
KEGG: npu:Npun_F1375 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.615
EIJ35650.1
KEGG: lma:LmjF34.0690 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.600
EIJ35570.1
Cellulose-binding family II; PFAM: Cellulose binding domain; Cytochrome c; Protein of unknown function (DUF1592); Protein of unknown function (DUF1587); Protein of unknown function (DUF1588); Protein of unknown function (DUF1595); Fibronectin type III domain; Protein of unknown function (DUF1585); COGs: COG2863 Cytochrome c553; InterProIPR001919:IPR003961:IPR003088:IPR013036:IPR 013043:IPR013042:IPR013039; KEGG: mca:MCA1493 cellulose-binding domain-containing protein; PFAM: Cellulose-binding domain, family II, bacterial type; Fibronectin, type III; Cytochrome c, class I; Protein of unk [...]
  
     0.581
EIJ32759.1
Hypothetical protein; KEGG: oaa:100079090 similar to hyaluronan-mediated motility receptor (RHAMM); SPTR: Putative uncharacterized protein.
  
     0.577
EIJ34725.1
Hypothetical protein; KEGG: bid:Bind_1772 WD repeat-containing protein; SPTR: Conserved hypothetical WD-repeat protein alr2800.
  
     0.572
EIJ33556.1
KEGG: neu:NE0232 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.550
EIJ33892.1
KEGG: hhy:Halhy_3307 hypothetical protein; SPTR: Peptidase families S8 and S53 domain protein.
  
     0.534
EIJ33943.1
TENA/THI-4 domain-containing protein; PFAM: TENA/THI-4/PQQC family; COGs: COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C; InterPro IPR004305; KEGG: rxy:Rxyl_2551 TENA/THI-4 protein; PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C; SPTR: TENA/THI-4 protein.
  
     0.534
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.