STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeaWDioxygenase, alpha subunit; Converts carnitine to trimethylamine and malic semialdehyde. Acts on both enantiomers; Belongs to the bacterial ring-hydroxylating dioxygenase alpha subunit family. CntA subfamily. (371 aa)    
Predicted Functional Partners:
yeaV
BCCT-family transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.783
yeaX
Putative dioxygenase beta subunit; Converts carnitine to trimethylamine and malic semialdehyde. Acts on both enantiomers; Belongs to the PDR/VanB family. CntB subfamily.
 
  
 0.759
ADY80704.1
Lipase.
  
    0.656
antB
Anthranilate dioxygenase small subunit.
 
 
 0.650
benB
Benzoate 1,2-dioxygenase beta subunit.
 
 
 0.642
gabD
Succinate-semialdehyde dehydrogenase (NAD(P)(+)); Belongs to the aldehyde dehydrogenase family.
  
  
 0.620
ADY81925.1
Putative dioxygenase, hydroxylase small component.
 
 
 0.605
paaE-2
Predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation.
 
  
 0.569
yeaU
Tartrate dehydrogenase.
       0.532
vanB
Vanillate O-demethylase oxidoreductase (vanillate degradation ferredoxin-like protein).
 
  
 0.500
Your Current Organism:
Acinetobacter pittii
NCBI taxonomy Id: 871585
Other names: A. pittii PHEA-2, Acinetobacter calcoaceticus PHEA-2, Acinetobacter calcoaceticus str. PHEA-2, Acinetobacter calcoaceticus strain PHEA-2, Acinetobacter pittii PHEA-2
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