STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA95963.1TRAP transporter, DctM subunit. (439 aa)    
Predicted Functional Partners:
SFA95950.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
    0.960
SFA95943.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.902
SFA79241.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.783
SFA75248.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
    0.719
SFA75234.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.703
SFA96344.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
    0.551
SFA95974.1
Sucrose-phosphate synthase.
       0.494
SFA95987.1
Glycosyltransferase family 28 C-terminal domain-containing protein.
       0.494
SFA96000.1
Glycosyltransferase, GT2 family.
       0.494
SFA96012.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.494
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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