STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF-2Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (325 aa)    
Predicted Functional Partners:
KPL87170.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
oppC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KPL87162.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
KPL85721.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.985
KPL87171.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.966
oppB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.950
oppA-3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.947
oppA-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.925
KPL87328.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 
0.913
KPL86392.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 
0.913
Your Current Organism:
Ardenticatena maritima
NCBI taxonomy Id: 872965
Other names: A. maritima, ATCC BAA-2145, Ardenticatena maritima Kawaichi et al. 2013, DSM 23922, JCM 17282, KCTC 23289, NBRC 107679, filamentous thermophilic bacterium 110S, strain 110S
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