Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF34611.1 | AEF34881.1 | JDM601_0611 | JDM601_0881 | Conserved hypothetical protein. | ATP dependent DNA ligase. | 0.698 |
AEF34611.1 | AEF36112.1 | JDM601_0611 | JDM601_2112 | Conserved hypothetical protein. | 5'-3' exonuclease. | 0.710 |
AEF34611.1 | AEF37216.1 | JDM601_0611 | JDM601_3216 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.631 |
AEF34611.1 | dnaN | JDM601_0611 | JDM601_0002 | Conserved hypothetical protein. | DNA polymerase III (beta chain) DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiatio [...] | 0.617 |
AEF34611.1 | polA | JDM601_0611 | JDM601_1802 | Conserved hypothetical protein. | DNA polymerase I PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.955 |
AEF34611.1 | recA | JDM601_0611 | JDM601_2483 | Conserved hypothetical protein. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.722 |
AEF34881.1 | AEF34611.1 | JDM601_0881 | JDM601_0611 | ATP dependent DNA ligase. | Conserved hypothetical protein. | 0.698 |
AEF34881.1 | AEF34883.1 | JDM601_0881 | JDM601_0883 | ATP dependent DNA ligase. | 2-hydroxyhepta-24-diene-17-dioate isomerase. | 0.913 |
AEF34881.1 | AEF35273.1 | JDM601_0881 | JDM601_1273 | ATP dependent DNA ligase. | Hydrolase. | 0.698 |
AEF34881.1 | AEF36112.1 | JDM601_0881 | JDM601_2112 | ATP dependent DNA ligase. | 5'-3' exonuclease. | 0.842 |
AEF34881.1 | AEF37216.1 | JDM601_0881 | JDM601_3216 | ATP dependent DNA ligase. | Conserved hypothetical protein. | 0.724 |
AEF34881.1 | dnaN | JDM601_0881 | JDM601_0002 | ATP dependent DNA ligase. | DNA polymerase III (beta chain) DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiatio [...] | 0.959 |
AEF34881.1 | ligA | JDM601_0881 | JDM601_2737 | ATP dependent DNA ligase. | NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.758 |
AEF34881.1 | polA | JDM601_0881 | JDM601_1802 | ATP dependent DNA ligase. | DNA polymerase I PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.925 |
AEF34881.1 | recA | JDM601_0881 | JDM601_2483 | ATP dependent DNA ligase. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.755 |
AEF34881.1 | xthA | JDM601_0881 | JDM601_0401 | ATP dependent DNA ligase. | Exodeoxyribonuclease III protein XthA. | 0.821 |
AEF34883.1 | AEF34881.1 | JDM601_0883 | JDM601_0881 | 2-hydroxyhepta-24-diene-17-dioate isomerase. | ATP dependent DNA ligase. | 0.913 |
AEF35273.1 | AEF34881.1 | JDM601_1273 | JDM601_0881 | Hydrolase. | ATP dependent DNA ligase. | 0.698 |
AEF35273.1 | AEF36112.1 | JDM601_1273 | JDM601_2112 | Hydrolase. | 5'-3' exonuclease. | 0.710 |
AEF35273.1 | AEF37216.1 | JDM601_1273 | JDM601_3216 | Hydrolase. | Conserved hypothetical protein. | 0.631 |
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