STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_04100Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family. (307 aa)    
Predicted Functional Partners:
shn_21420
Nucleoside/nucleotide kinase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.546
shn_04105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
shn_04110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
shn_04095
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.511
shn_04090
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.496
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.487
shn_04120
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.468
azoR
FMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
 
  
 0.448
shn_04080
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.434
shn_04085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.434
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.