STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEL25793.1PFAM: L-seryl-tRNA selenium transferase; TIGRFAM: uncharacterized pyridoxal phosphate-dependent enzyme; COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; InterPro IPR006311; KEGG: dfe:Dfer_2440 selenocysteine synthase (seryl-tRNASer selenium transferase)-like protein; SPTR: Selenocysteine synthase (Seryl-tRNASer selenium transferase)-like protein. (407 aa)    
Predicted Functional Partners:
AEL25794.1
PFAM: Amidohydrolase family; COGs: COG3964 amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_3965 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase.
 
  
 0.958
AEL27795.1
PfkB domain protein; PFAM: pfkB family carbohydrate kinase; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: tjr:TherJR_2254 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein.
  
 
  0.908
AEL25791.1
PFAM: Amidohydrolase family; COGs: COG3964 amidohydrolase; InterPro IPR006680; KEGG: fbc:FB2170_04535 dihydroorotase; PFAM: Amidohydrolase 1; SPTR: Dihydroorotase.
 
  
 0.904
AEL27793.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: fba:FIC_01886 4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase; SPTR: KDPG and KHG aldolase; TIGRFAM: KDPG/KHG aldolase.
     
  0.900
AEL28112.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: sli:Slin_3955 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase; SPTR: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: KDPG/KHG aldolase.
     
  0.900
AEL24784.1
COGs: COG3964 amidohydrolase; InterPro IPR006680; KEGG: fbc:FB2170_04535 dihydroorotase; PFAM: Amidohydrolase 1; SPTR: Dihydroorotase.
 
  
 0.823
AEL25725.1
PFAM: Amidohydrolase family; COGs: COG3964 amidohydrolase; InterPro IPR013108:IPR006680; KEGG: dfe:Dfer_3350 dihydroorotase; PFAM: Amidohydrolase 1; Amidohydrolase 3; SPTR: Amidohydrolase.
 
  
 0.823
AEL25724.1
COGs: COG3964 amidohydrolase; InterPro IPR006680; KEGG: dfe:Dfer_3349 dihydroorotase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase.
 
  
 0.821
AEL25789.1
Cytochrome c class I; PFAM: Glucose / Sorbosone dehydrogenase; Cytochrome c; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR003088; KEGG: fbc:FB2170_15068 L-sorbosone dehydrogenase; PFAM: Cytochrome c, class I; SPTR: L-sorbosone dehydrogenase.
 
     0.713
AEL25734.1
PFAM: Endoribonuclease L-PSP; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: shg:Sph21_2959 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP.
 
     0.703
Your Current Organism:
Cyclobacterium marinum
NCBI taxonomy Id: 880070
Other names: C. marinum DSM 745, Cyclobacterium marinum DSM 745, Cyclobacterium marinum LMG 13164, Cyclobacterium marinum str. DSM 745, Cyclobacterium marinum strain DSM 745
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