STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB08010.1ABC-type transporter, integral membrane subunit; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dal:Dalk_0869 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative oligopeptide ABC transporter, permease protein; IMG reference gene:2504153632; PFAM: Binding-protein-dependent transport system inner membrane component. (329 aa)    
Predicted Functional Partners:
AEB08011.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR010066:IPR003593:IPR000515:IPR003439:IPR 013563; KEGG: dal:Dalk_0870 binding-protein-dependent transport systems inner membrane component; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC t [...]
 0.999
AEB08009.1
COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: det:DET1494 peptide ABC transporter, periplasmic peptide-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Putative extracellular solute-binding protein, family 5; IMG reference gene:2504153631; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
 0.997
AEB10678.1
ABC-type transporter, integral membrane subunit; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sat:SYN_01342 oligopeptide transport system permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Oligopeptide transport system permease protein; IMG reference gene:2504156450; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.996
AEB08330.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593:IPR010066:IPR003439:IPR013563; KEGG: bbe:BBR47_15580 ABC transporter ATP binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide transport ATP-binding protein AppD; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; IMG reference gene:2504153968; PFAM: ABC transporter; O [...]
 0.992
AEB10486.1
COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: sat:SYN_00608 oligopeptide-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Oligopeptide-binding protein; IMG reference gene:2504156233; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 0.989
AEB08012.1
Nickel-transporting ATPase; COGs: COG1124 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: mtp:Mthe_1033 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504153634; PFAM: ABC transporter.
  
 0.967
AEB08329.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003593:IPR010066:IPR003439:IPR013563; KEGG: mxa:MXAN_4664 oligopeptide/dipeptide ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; IMG reference gene:2504153967; PFA [...]
 
 0.932
AEB09216.1
ABC-type transporter, integral membrane subunit; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dbr:Deba_1215 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; IMG reference gene:2504154898; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  
 
0.921
AEB08008.1
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: mch:Mchl_1472 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; IMG reference gene:2504153630; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.487
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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