STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB09275.1SNARE associated Golgi protein-like protein; COGs: COG0398 conserved hypothetical protein; InterPro IPR015414; KEGG: dal:Dalk_0616 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154958; PFAM: SNARE associated Golgi protein. (260 aa)    
Predicted Functional Partners:
AEB09277.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.775
AEB09276.1
Conserved hypothetical protein CHP01212; COGs: COG1242 Fe-S oxidoreductase; InterPro IPR006638:IPR005911:IPR007197; KEGG: dal:Dalk_2634 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP01212; IMG reference gene:2504154959; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family.
       0.774
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.773
AEB09274.1
O-methyltransferase family 2; InterPro IPR001077; KEGG: gme:Gmet_1733 O-methyltransferase family protein; PFAM: O-methyltransferase, family 2; SPTR: O-methyltransferase, family 2; IMG reference gene:2504154957; PFAM: O-methyltransferase.
       0.443
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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