STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB09899.1Protein of unknown function DUF6 transmembrane; InterPro IPR000620; KEGG: sat:SYN_00035 DMT family permease; PFAM: Drug/metabolite transporter; SPTR: Permease of the DMT superfamily; IMG reference gene:2504155623; PFAM: EamA-like transporter family. (292 aa)    
Predicted Functional Partners:
AEB09898.1
ApbE family lipoprotein; COGs: COG2122 conserved hypothetical protein; InterPro IPR003374; KEGG: dbr:Deba_1296 ApbE family lipoprotein; PFAM: Thiamine synthesis ApbE/UPF0280; SPTR: Putative uncharacterized protein; IMG reference gene:2504155622; PFAM: ApbE family.
       0.768
AEB09900.1
COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: geo:Geob_2507 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase class V; IMG reference gene:2504155624; PFAM: Aminotransferase class-V.
       0.655
AEB08459.1
COGs: COG4313 Protein involved in meta-pathway of phenol degradation; KEGG: sat:SYN_00385 hypothetical protein; SPTR: Hypothetical exported protein; IMG reference gene:2504154099.
  
     0.531
AEB09901.1
KEGG: dal:Dalk_0015 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504155625.
  
    0.498
AEB08149.1
Sodium/hydrogen exchanger; COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153:IPR003148; KEGG: sfu:Sfum_2433 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; SPTR: Sodium/hydrogen exchanger; IMG reference gene:2504153777; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.467
AEB09902.1
ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG0474 Cation transport ATPase; InterProIPR001757:IPR004014:IPR008250:IPR005834:IPR 006068; KEGG: mpd:MCP_2677 cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; PRIAM: Calcium-transporting ATPase; SMART: ATPase, P-type cation-transporter, N-terminal; SPTR: Cation-transporting ATPase; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IMG reference gen [...]
  
 
 0.422
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.416
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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