STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF19802.1Oligopeptide transport system ATP-binding protein. (336 aa)    
Predicted Functional Partners:
APF19804.1
Peptide/nickel transport system permease protein.
  
 0.998
APF19805.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  
 0.976
APF19803.1
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
  
0.969
APF19806.1
ABC-type transport system, substrate-binding protein.
 
  
 0.945
Cabys_350
Iron complex transport system ATP-binding protein.
 
    
0.819
APF19801.1
Hypothetical protein.
       0.773
APF19807.1
Hypothetical protein.
       0.746
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
  
 
 0.725
APF19375.1
Cobalt/nickel transport system permease protein.
  
 
 0.725
APF19800.1
Hypothetical protein.
       0.709
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.