D8RG45_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8RG45_SELML

Uncharacterized protein. (139 aa)

Predicted Functional Partners:

D8R9E7_SELML

0.984

D8SU30_SELML

0.578

D8RDZ9_SELML

0.577

D8RQR6_SELML

0.577

D8S024_SELML

0.577

D8RT51_SELML

0.576

D8SQJ5_SELML

0.576

D8QPW0_SELML

0.575

D8SKL4_SELML

0.575

D8QVG5_SELML

0.530

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QPW0_SELML	D8RG45_SELML	D8QPW0	D8RG45	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.575
D8QPW0_SELML	D8SU30_SELML	D8QPW0	D8SU30	WD_REPEATS_REGION domain-containing protein.	AP2/ERF domain-containing protein.	0.496
D8QVG5_SELML	D8RG45_SELML	D8QVG5	D8RG45	Uncharacterized protein.	Uncharacterized protein.	0.530
D8R9E7_SELML	D8RG45_SELML	D8R9E7	D8RG45	Uncharacterized protein.	Uncharacterized protein.	0.984
D8RDZ9_SELML	D8RG45_SELML	D8RDZ9	D8RG45	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.577
D8RDZ9_SELML	D8RQR6_SELML	D8RDZ9	D8RQR6	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.587
D8RDZ9_SELML	D8S024_SELML	D8RDZ9	D8S024	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.587
D8RG45_SELML	D8QPW0_SELML	D8RG45	D8QPW0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.575
D8RG45_SELML	D8QVG5_SELML	D8RG45	D8QVG5	Uncharacterized protein.	Uncharacterized protein.	0.530
D8RG45_SELML	D8R9E7_SELML	D8RG45	D8R9E7	Uncharacterized protein.	Uncharacterized protein.	0.984
D8RG45_SELML	D8RDZ9_SELML	D8RG45	D8RDZ9	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.577
D8RG45_SELML	D8RQR6_SELML	D8RG45	D8RQR6	Uncharacterized protein.	Uncharacterized protein.	0.577
D8RG45_SELML	D8RT51_SELML	D8RG45	D8RT51	Uncharacterized protein.	Uncharacterized protein.	0.576
D8RG45_SELML	D8S024_SELML	D8RG45	D8S024	Uncharacterized protein.	Uncharacterized protein.	0.577
D8RG45_SELML	D8SKL4_SELML	D8RG45	D8SKL4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.575
D8RG45_SELML	D8SQJ5_SELML	D8RG45	D8SQJ5	Uncharacterized protein.	Uncharacterized protein.	0.576
D8RG45_SELML	D8SU30_SELML	D8RG45	D8SU30	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.578
D8RQR6_SELML	D8RDZ9_SELML	D8RQR6	D8RDZ9	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.587
D8RQR6_SELML	D8RG45_SELML	D8RQR6	D8RG45	Uncharacterized protein.	Uncharacterized protein.	0.577
D8RQR6_SELML	D8S024_SELML	D8RQR6	D8S024	Uncharacterized protein.	Uncharacterized protein.	0.900