STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPL5-1Ubiquitin-protein ligase, UPL5. (810 aa)    
Predicted Functional Partners:
D8S312_SELML
F-box domain-containing protein.
    
 0.972
D8S880_SELML
Uncharacterized protein.
    
 0.972
D8S8X5_SELML
Ribosomal_S27 domain-containing protein.
    
 0.964
D8S0R6_SELML
Ubiquitin-conjugating enzyme 25, E2-like protein.
    
 0.936
D8SBE2_SELML
Ubiquitin-conjugating enzyme 25, E2-like protein.
    
 0.936
D8RF62_SELML
VWFA domain-containing protein.
    
 0.903
D8SDB5_SELML
VWFA domain-containing protein.
    
 0.903
D8QW34_SELML
Uncharacterized protein.
    
 0.887
D8RT32_SELML
Ubiquitin-like domain-containing protein.
    
0.887
D8SAT8_SELML
F-box domain-containing protein.
    
 0.887
Your Current Organism:
Selaginella moellendorffii
NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii
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