STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0234MiaB-like tRNA modifying enzyme YliG, TIGR01125. (459 aa)    
Predicted Functional Partners:
mviN
Integral membrane protein MviN.
       0.686
EIO_0603
Signal peptidase I.
  
    0.620
EIO_1709
tRNA-dihydrouridine synthase A.
 
  
 0.550
trmE
tRNA modification GTPase.
   
  
 0.486
prfA
Peptide chain release factor 1.
  
  
 0.485
EIO_2632
Ribosomal RNA large subunit methyltransferase N.
 
  
 0.482
truB
tRNA pseudouridine synthase B.
  
  
 0.478
greA
Transcription elongation factor GreA.
      
 0.435
EIO_2182
Ornithine carbamoyltransferase.
      
 0.434
EIO_1207
Integrase/recombinase.
     
 0.432
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.