STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0720TonB-dependent receptor. (601 aa)    
Predicted Functional Partners:
EIO_0719
Periplasmic binding protein.
 
  
 0.965
EIO_0718
ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit.
 
    0.949
EIO_0716
ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit.
 
     0.948
EIO_0717
ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit.
 
    0.941
EIO_2340
Energy transducer TonB.
 
 
 
 0.823
EIO_2199
C-terminal TonB protein.
   
 
 0.806
EIO_2138
Possible TolA protein.
   
 
 0.799
EIO_0076
Chromosome partitioning protein.
    
 
 0.771
parA
Chromosome partitioning protein ParA.
    
 
 0.771
EIO_0336
Outer membrane efflux protein.
  
  
 0.758
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.