STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1606Transcriptional activator, putative. (213 aa)    
Predicted Functional Partners:
EIO_1607
RNA polymerase sigma factor RpoE.
 
 
 0.998
EIO_1531
RNA polymerase sigma factor.
 
 
 0.973
EIO_1608
FAD dependent oxidoreductase.
 
  
 0.972
EIO_1609
Putative cyclopropane/cyclopropene fatty acid synthesis protein.
 
  
 0.941
EIO_1605
Short-chain dehydrogenase/reductase SDR.
 
   
 0.910
EIO_1610
Cyclopropane-fatty-acyl-phospholipid synthase, putative.
 
   
 0.824
phrB
Deoxyribodipyrimidine photolyase.
 
   
 0.699
EIO_2367
Short-chain dehydrogenase/reductase SDR.
 
   
 0.698
cfa
Cyclopropane-fatty-acyl-phospholipid synthase CfaS.
 
   
 0.606
EIO_1611
Cyclopropane-fatty-acyl-phospholipid synthase, putative.
 
   
 0.553
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.