STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2548Ribonuclease P protein component. (142 aa)    
Predicted Functional Partners:
EIO_2549
Conserved hypothetical protein.
  
  
 0.983
EIO_2547
Ribosomal protein L34.
  
  
 0.975
oxaA
Inner membrane protein oxaA, putative.
 
  
 0.960
EIO_2550
tRNA 2-thiocytidine biosynthesis protein.
  
  
 0.851
rplD
50S ribosomal protein L4.
   
  
 0.851
EIO_2594
50S ribosomal protein L3.
   
  
 0.843
EIO_2595
30S ribosomal protein S10.
   
  
 0.821
rpsT
Ribosomal protein S20.
  
    0.820
EIO_2600
30S ribosomal protein S12.
   
    0.819
EIO_0418
50S ribosomal protein L21.
  
    0.811
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.